htsjdk.samtools.cram.encoding

Interface Encoding<T>

Type Parameters:

T - data series type

All Known Implementing Classes:

BetaIntegerEncoding, ByteArrayLenEncoding, ByteArrayStopEncoding, ExternalByteArrayEncoding, ExternalByteEncoding, ExternalIntegerEncoding, ExternalLongEncoding, GammaIntegerEncoding, GolombIntegerEncoding, GolombLongEncoding, GolombRiceIntegerEncoding, HuffmanByteEncoding, HuffmanIntegerEncoding, NullEncoding, SubexponentialIntegerEncoding

public interface Encoding<T>

An interface to describe how a data series is encoded. It also has methods to serialize/deserialize to/from byte array and a method to construct a BitCodec instance.

Method Summary

Modifier and Type	Method and Description
BitCodec<T>	buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap, java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)
void	fromByteArray(byte[] data)
EncodingID	id()
byte[]	toByteArray()

Method Detail

id

EncodingID id()

toByteArray

byte[] toByteArray()

fromByteArray

void fromByteArray(byte[] data)

buildCodec

BitCodec<T> buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap,
                       java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)