htsjdk.samtools.cram.encoding.huffman.codec

Class HuffmanByteEncoding

java.lang.Object

htsjdk.samtools.cram.encoding.huffman.codec.HuffmanByteEncoding

All Implemented Interfaces:

Encoding<java.lang.Byte>

public class HuffmanByteEncoding
extends java.lang.Object
implements Encoding<java.lang.Byte>

Constructor Summary

Constructors

Constructor and Description
HuffmanByteEncoding()

Method Summary

Modifier and Type	Method and Description
BitCodec<java.lang.Byte>	buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap, java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)
void	fromByteArray(byte[] data)
EncodingID	id()
byte[]	toByteArray()
static EncodingParams	toParam(byte[] bfValues, int[] bfBitLens)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HuffmanByteEncoding

public HuffmanByteEncoding()

Method Detail

id

public EncodingID id()

Specified by:

id in interface Encoding<java.lang.Byte>

toByteArray

public byte[] toByteArray()

Specified by:

toByteArray in interface Encoding<java.lang.Byte>

fromByteArray

public void fromByteArray(byte[] data)

Specified by:

fromByteArray in interface Encoding<java.lang.Byte>

buildCodec

public BitCodec<java.lang.Byte> buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap,
                                           java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)

Specified by:

buildCodec in interface Encoding<java.lang.Byte>

toParam

public static EncodingParams toParam(byte[] bfValues,
                                     int[] bfBitLens)