htsjdk.samtools.cram.encoding

Class ExternalIntegerEncoding

java.lang.Object

htsjdk.samtools.cram.encoding.ExternalIntegerEncoding

All Implemented Interfaces:

Encoding<java.lang.Integer>

public class ExternalIntegerEncoding
extends java.lang.Object
implements Encoding<java.lang.Integer>

Constructor Summary

Constructors

Constructor and Description
ExternalIntegerEncoding()

Method Summary

Modifier and Type	Method and Description
BitCodec<java.lang.Integer>	buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap, java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)
void	fromByteArray(byte[] data)
EncodingID	id()
byte[]	toByteArray()
static EncodingParams	toParam(int contentId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExternalIntegerEncoding

public ExternalIntegerEncoding()

Method Detail

toParam

public static EncodingParams toParam(int contentId)

toByteArray

public byte[] toByteArray()

Specified by:

toByteArray in interface Encoding<java.lang.Integer>

fromByteArray

public void fromByteArray(byte[] data)

Specified by:

fromByteArray in interface Encoding<java.lang.Integer>

buildCodec

public BitCodec<java.lang.Integer> buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap,
                                              java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)

Specified by:

buildCodec in interface Encoding<java.lang.Integer>

id

public EncodingID id()

Specified by:

id in interface Encoding<java.lang.Integer>