htsjdk.samtools.cram.encoding

Class BetaIntegerEncoding

java.lang.Object

htsjdk.samtools.cram.encoding.BetaIntegerEncoding

All Implemented Interfaces:

Encoding<java.lang.Integer>

public class BetaIntegerEncoding
extends java.lang.Object
implements Encoding<java.lang.Integer>

Constructor Summary

Constructors

Constructor and Description
BetaIntegerEncoding()
BetaIntegerEncoding(int offset, int bitLimit)

Method Summary

Modifier and Type	Method and Description
BitCodec<java.lang.Integer>	buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap, java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)
void	fromByteArray(byte[] data)
EncodingID	id()
byte[]	toByteArray()
static EncodingParams	toParam(int offset, int bitLimit)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BetaIntegerEncoding

public BetaIntegerEncoding()

BetaIntegerEncoding

public BetaIntegerEncoding(int offset,
                           int bitLimit)

Method Detail

id

public EncodingID id()

Specified by:

id in interface Encoding<java.lang.Integer>

toParam

public static EncodingParams toParam(int offset,
                                     int bitLimit)

toByteArray

public byte[] toByteArray()

Specified by:

toByteArray in interface Encoding<java.lang.Integer>

fromByteArray

public void fromByteArray(byte[] data)

Specified by:

fromByteArray in interface Encoding<java.lang.Integer>

buildCodec

public BitCodec<java.lang.Integer> buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap,
                                              java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)

Specified by:

buildCodec in interface Encoding<java.lang.Integer>