htsjdk.samtools.cram.encoding

Class GolombRiceIntegerEncoding

java.lang.Object

htsjdk.samtools.cram.encoding.GolombRiceIntegerEncoding

All Implemented Interfaces:

Encoding<java.lang.Integer>

public class GolombRiceIntegerEncoding
extends java.lang.Object
implements Encoding<java.lang.Integer>

Constructor Summary

Constructors

Constructor and Description
GolombRiceIntegerEncoding()

Method Summary

Modifier and Type	Method and Description
BitCodec<java.lang.Integer>	buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap, java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)
void	fromByteArray(byte[] data)
EncodingID	id()
byte[]	toByteArray()
static EncodingParams	toParam(int offset, int m)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GolombRiceIntegerEncoding

public GolombRiceIntegerEncoding()

Method Detail

id

public EncodingID id()

Specified by:

id in interface Encoding<java.lang.Integer>

toParam

public static EncodingParams toParam(int offset,
                                     int m)

toByteArray

public byte[] toByteArray()

Specified by:

toByteArray in interface Encoding<java.lang.Integer>

fromByteArray

public void fromByteArray(byte[] data)

Specified by:

fromByteArray in interface Encoding<java.lang.Integer>

buildCodec

public BitCodec<java.lang.Integer> buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap,
                                              java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)

Specified by:

buildCodec in interface Encoding<java.lang.Integer>