| Interface | Description |
|---|---|
| CloseableTribbleIterator<T extends Feature> |
The basic iterator we use in Tribble, which allows closing and basic iteration.
|
| Feature |
Represents a locus on a reference sequence.
|
| FeatureCodec<FEATURE_TYPE extends Feature,SOURCE> |
The base interface for classes that read in features.
|
| FeatureReader<T extends Feature> |
the basic interface that feature sources need to match
|
| NameAwareCodec |
Created by IntelliJ IDEA.
|
| Class | Description |
|---|---|
| AbstractFeatureCodec<FEATURE_TYPE extends Feature,SOURCE> |
Simple basic class providing much of the basic functionality of codecs
Every concrete subclass must implement
FeatureCodec.canDecode(String) to indicate whether it can decode the file. |
| AbstractFeatureReader<T extends Feature,SOURCE> |
jrobinso
the feature reader class, which uses indices and codecs to read in Tribble file formats.
|
| AbstractFeatureReader.ComponentMethods | |
| AsciiFeatureCodec<T extends Feature> |
A convenience base class for codecs that want to read in features from ASCII lines.
|
| BinaryFeatureCodec<T extends Feature> |
Implements common methods of
FeatureCodecs that read from PositionalBufferedStreams. |
| FeatureCodecHeader |
A class to represent a header of a feature containing file.
|
| SimpleFeature |
A simple concrete Feature.
|
| TabixFeatureReader<T extends Feature,SOURCE> | |
| Tribble |
Common, tribble wide constants and static functions
|
| TribbleIndexedFeatureReader<T extends Feature,SOURCE> |
A reader for text feature files (i.e.
|