htsjdk.tribble

Class Tribble

java.lang.Object

htsjdk.tribble.Tribble

public class Tribble
extends java.lang.Object

Common, tribble wide constants and static functions

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	STANDARD_INDEX_EXTENSION

Method Summary

Modifier and Type	Method and Description
static java.io.File	indexFile(java.io.File file) Return the File of the index file for the provided vcf file Does not actually create an index
static java.lang.String	indexFile(java.lang.String filename) Return the name of the index file for the provided vcf filename Does not actually create an index
static java.io.File	tabixIndexFile(java.io.File file) Return the File of the tabix index file for the provided vcf file Does not actually create an index
static java.lang.String	tabixIndexFile(java.lang.String filename) Return the name of the tabix index file for the provided vcf filename Does not actually create an index

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

STANDARD_INDEX_EXTENSION

public static final java.lang.String STANDARD_INDEX_EXTENSION

See Also:

Constant Field Values

Method Detail

indexFile

public static java.lang.String indexFile(java.lang.String filename)

Return the name of the index file for the provided vcf filename Does not actually create an index

Parameters:

filename - name of the vcf file

Returns:

non-null String representing the index filename

indexFile

public static java.io.File indexFile(java.io.File file)

Return the File of the index file for the provided vcf file Does not actually create an index

Parameters:

file - the vcf file

Returns:

a non-null File representing the index

tabixIndexFile

public static java.lang.String tabixIndexFile(java.lang.String filename)

Return the name of the tabix index file for the provided vcf filename Does not actually create an index

Parameters:

filename - name of the vcf file

Returns:

non-null String representing the index filename

tabixIndexFile

public static java.io.File tabixIndexFile(java.io.File file)

Return the File of the tabix index file for the provided vcf file Does not actually create an index

Parameters:

file - the vcf file

Returns:

a non-null File representing the index