htsjdk.variant.variantcontext.filter

Class FilteringIterator

java.lang.Object

htsjdk.variant.variantcontext.filter.FilteringVariantContextIterator

htsjdk.variant.variantcontext.filter.FilteringIterator

All Implemented Interfaces:

CloseableIterator<VariantContext>, java.io.Closeable, java.lang.AutoCloseable, java.lang.Iterable<VariantContext>, java.util.Iterator<VariantContext>

Deprecated.

@Deprecated
public class FilteringIterator
extends FilteringVariantContextIterator

A filtering iterator for VariantContexts that takes a base iterator and a VariantContextFilter. The iterator returns all the variantcontexts for which the filter's function "test" returns true (and only those)

Constructor Summary

Constructors

Constructor and Description
FilteringIterator(java.util.Iterator<VariantContext> iterator, VariantContextFilter filter) Deprecated.

Method Summary

Methods inherited from class htsjdk.variant.variantcontext.filter.FilteringVariantContextIterator

close, hasNext, iterator, next, remove

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface htsjdk.samtools.util.CloseableIterator

stream, toList

Methods inherited from interface java.util.Iterator

forEachRemaining

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Constructor Detail

FilteringIterator

public FilteringIterator(java.util.Iterator<VariantContext> iterator,
                         VariantContextFilter filter)

Deprecated.