htsjdk.samtools.cram.encoding

Class SubexponentialIntegerEncoding

java.lang.Object

htsjdk.samtools.cram.encoding.SubexponentialIntegerEncoding

All Implemented Interfaces:

Encoding<java.lang.Integer>

public class SubexponentialIntegerEncoding
extends java.lang.Object
implements Encoding<java.lang.Integer>

Constructor Summary

Constructors

Constructor and Description
SubexponentialIntegerEncoding()
SubexponentialIntegerEncoding(int offset, int k)

Method Summary

Modifier and Type	Method and Description
BitCodec<java.lang.Integer>	buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap, java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)
void	fromByteArray(byte[] data)
EncodingID	id()
byte[]	toByteArray()
static EncodingParams	toParam(int offset, int k)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SubexponentialIntegerEncoding

public SubexponentialIntegerEncoding()

SubexponentialIntegerEncoding

public SubexponentialIntegerEncoding(int offset,
                                     int k)

Method Detail

id

public EncodingID id()

Specified by:

id in interface Encoding<java.lang.Integer>

toParam

public static EncodingParams toParam(int offset,
                                     int k)

toByteArray

public byte[] toByteArray()

Specified by:

toByteArray in interface Encoding<java.lang.Integer>

fromByteArray

public void fromByteArray(byte[] data)

Specified by:

fromByteArray in interface Encoding<java.lang.Integer>

buildCodec

public BitCodec<java.lang.Integer> buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap,
                                              java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)

Specified by:

buildCodec in interface Encoding<java.lang.Integer>