htsjdk.samtools.cram.encoding

Class GolombIntegerEncoding

java.lang.Object

htsjdk.samtools.cram.encoding.GolombIntegerEncoding

All Implemented Interfaces:

Encoding<java.lang.Integer>

public class GolombIntegerEncoding
extends java.lang.Object
implements Encoding<java.lang.Integer>

Constructor Summary

Constructors

Constructor and Description
GolombIntegerEncoding()

Method Summary

Modifier and Type	Method and Description
BitCodec<java.lang.Integer>	buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap, java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)
void	fromByteArray(byte[] data)
EncodingID	id()
byte[]	toByteArray()
static EncodingParams	toParam(int m)
static EncodingParams	toParam(int m, int offset)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GolombIntegerEncoding

public GolombIntegerEncoding()

Method Detail

id

public EncodingID id()

Specified by:

id in interface Encoding<java.lang.Integer>

toParam

public static EncodingParams toParam(int m)

toParam

public static EncodingParams toParam(int m,
                                     int offset)

toByteArray

public byte[] toByteArray()

Specified by:

toByteArray in interface Encoding<java.lang.Integer>

fromByteArray

public void fromByteArray(byte[] data)

Specified by:

fromByteArray in interface Encoding<java.lang.Integer>

buildCodec

public BitCodec<java.lang.Integer> buildCodec(java.util.Map<java.lang.Integer,java.io.InputStream> inputMap,
                                              java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap)

Specified by:

buildCodec in interface Encoding<java.lang.Integer>