htsjdk.samtools.cram.encoding

Class ExternalCompressor

java.lang.Object

htsjdk.samtools.cram.encoding.ExternalCompressor

public abstract class ExternalCompressor
extends java.lang.Object

Method Summary

Modifier and Type	Method and Description
abstract byte[]	compress(byte[] data)
static ExternalCompressor	createBZIP2()
static ExternalCompressor	createGZIP()
static ExternalCompressor	createLZMA()
static ExternalCompressor	createRANS(RANS.ORDER order)
static ExternalCompressor	createRAW()
BlockCompressionMethod	getMethod()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getMethod

public BlockCompressionMethod getMethod()

compress

public abstract byte[] compress(byte[] data)

createRAW

public static ExternalCompressor createRAW()

createGZIP

public static ExternalCompressor createGZIP()

createLZMA

public static ExternalCompressor createLZMA()

createBZIP2

public static ExternalCompressor createBZIP2()

createRANS

public static ExternalCompressor createRANS(RANS.ORDER order)