htsjdk.samtools.util

Class Md5CalculatingOutputStream

java.lang.Object

java.io.OutputStream

htsjdk.samtools.util.Md5CalculatingOutputStream

All Implemented Interfaces:

java.io.Closeable, java.io.Flushable, java.lang.AutoCloseable

public class Md5CalculatingOutputStream
extends java.io.OutputStream

Class to generate an MD5 string for a file as it is being read

Constructor Summary

Constructors

Constructor and Description
Md5CalculatingOutputStream(java.io.OutputStream os, java.io.File digestFile) Constructor that takes in the OutputStream that we are wrapping and creates the MD5 MessageDigest

Method Summary

Modifier and Type	Method and Description
void	close()
void	flush()
java.lang.String	md5()
void	write(byte[] b)
void	write(byte[] b, int off, int len)
void	write(int b)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Md5CalculatingOutputStream

public Md5CalculatingOutputStream(java.io.OutputStream os,
                                  java.io.File digestFile)

Constructor that takes in the OutputStream that we are wrapping and creates the MD5 MessageDigest

Method Detail

write

public void write(int b)
           throws java.io.IOException

Specified by:

write in class java.io.OutputStream

Throws:

java.io.IOException

write

public void write(byte[] b)
           throws java.io.IOException

Overrides:

write in class java.io.OutputStream

Throws:

java.io.IOException

write

public void write(byte[] b,
                  int off,
                  int len)
           throws java.io.IOException

Overrides:

write in class java.io.OutputStream

Throws:

java.io.IOException

md5

public java.lang.String md5()

close

public void close()
           throws java.io.IOException

Specified by:

close in interface java.io.Closeable

Specified by:

close in interface java.lang.AutoCloseable

Overrides:

close in class java.io.OutputStream

Throws:

java.io.IOException

flush

public void flush()
           throws java.io.IOException

Specified by:

flush in interface java.io.Flushable

Overrides:

flush in class java.io.OutputStream

Throws:

java.io.IOException