public class IntervalListReferenceSequenceMask extends java.lang.Object implements ReferenceSequenceMask
Constructor and Description |
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IntervalListReferenceSequenceMask(IntervalList intervalList) |
Modifier and Type | Method and Description |
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boolean |
get(int sequenceIndex,
int position)
It is required that sequenceIndex is >= any previous sequenceIndex passed to this class.
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SAMFileHeader |
getHeader() |
int |
getMaxPosition() |
int |
getMaxSequenceIndex() |
int |
nextPosition(int sequenceIndex,
int position)
It is required that sequenceIndex is >= any previous sequenceIndex passed to this class.
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public IntervalListReferenceSequenceMask(IntervalList intervalList)
public boolean get(int sequenceIndex, int position)
get
in interface ReferenceSequenceMask
public int nextPosition(int sequenceIndex, int position)
nextPosition
in interface ReferenceSequenceMask
public int getMaxSequenceIndex()
getMaxSequenceIndex
in interface ReferenceSequenceMask
public int getMaxPosition()
getMaxPosition
in interface ReferenceSequenceMask
public SAMFileHeader getHeader()