htsjdk.samtools.seekablestream

Interface ISeekableStreamFactory

public interface ISeekableStreamFactory

Factory for creating SeekableStreams based on URLs/paths. Implementations can be set as the default with SeekableStreamFactory.setInstance(ISeekableStreamFactory)

Method Summary

Modifier and Type	Method and Description
SeekableStream	getBufferedStream(SeekableStream stream) Return a buffered SeekableStream which wraps the input stream using the default buffer size
SeekableStream	getBufferedStream(SeekableStream stream, int bufferSize) Return a buffered SeekableStream which wraps the input stream
SeekableStream	getStreamFor(java.lang.String path)
SeekableStream	getStreamFor(java.net.URL url)

Method Detail

getStreamFor

SeekableStream getStreamFor(java.net.URL url)
                     throws java.io.IOException

Throws:

java.io.IOException

getStreamFor

SeekableStream getStreamFor(java.lang.String path)
                     throws java.io.IOException

Throws:

java.io.IOException

getBufferedStream

SeekableStream getBufferedStream(SeekableStream stream)

Return a buffered SeekableStream which wraps the input stream using the default buffer size

Parameters:

stream -

Returns:

getBufferedStream

SeekableStream getBufferedStream(SeekableStream stream,
                                 int bufferSize)

Return a buffered SeekableStream which wraps the input stream

Parameters:

stream -

bufferSize -

Returns: