htsjdk.samtools.filter

Interfaces

• SamRecordFilter

Classes

• AbstractJavascriptFilter
• AggregateFilter
• AlignedFilter
• DuplicateReadFilter
• FailsVendorReadQualityFilter
• FilteringIterator
• FilteringSamIterator
• InsertSizeFilter
• IntervalFilter
• IntervalKeepPairFilter
• JavascriptSamRecordFilter
• MappingQualityFilter
• NotPrimaryAlignmentFilter
• OverclippedReadFilter
• ReadNameFilter
• SecondaryAlignmentFilter
• SecondaryOrSupplementaryFilter
• SolexaNoiseFilter
• TagFilter
• WholeReadClippedFilter