public class FilteringSamIterator extends java.lang.Object implements CloseableIterator<SAMRecord>
Constructor and Description |
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FilteringSamIterator(java.util.Iterator<SAMRecord> iterator,
SamRecordFilter filter)
Constructor
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FilteringSamIterator(java.util.Iterator<SAMRecord> iterator,
SamRecordFilter filter,
boolean filterByPair)
Constructor
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Modifier and Type | Method and Description |
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void |
close()
Should be implemented to close/release any underlying resources.
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boolean |
hasNext()
Returns true if the iteration has more elements.
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SAMRecord |
next()
Returns the next element in the iteration.
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void |
remove()
Required method for Iterator API.
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
stream, toList
public FilteringSamIterator(java.util.Iterator<SAMRecord> iterator, SamRecordFilter filter, boolean filterByPair)
iterator
- the backing iteratorfilter
- the filter (which may be a FilterAggregator)filterByPair
- if true, filter reads in pairspublic FilteringSamIterator(java.util.Iterator<SAMRecord> iterator, SamRecordFilter filter)
iterator
- the backing iteratorfilter
- the filter (which may be a FilterAggregator)public boolean hasNext()
hasNext
in interface java.util.Iterator<SAMRecord>
public SAMRecord next()
next
in interface java.util.Iterator<SAMRecord>
java.util.NoSuchElementException
public void remove()
remove
in interface java.util.Iterator<SAMRecord>
java.lang.UnsupportedOperationException
public void close()
CloseableIterator
close
in interface CloseableIterator<SAMRecord>
close
in interface java.io.Closeable
close
in interface java.lang.AutoCloseable