htsjdk.samtools.cram.structure

Class Container

java.lang.Object

htsjdk.samtools.cram.structure.Container

public class Container
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
int	alignmentSpan
int	alignmentStart
long	bases
int	blockCount
Block[]	blocks Container data
long	buildHeaderTime
long	buildSlicesTime
int	checksum
int	containerByteSize Byte size of the content excluding header.
long	globalRecordCounter
CompressionHeader	header
int[]	landmarks
int	nofRecords
long	offset Container start in the stream.
long	parseTime
long	readTime
int	sequenceId
Slice[]	slices
long	writeTime

Constructor Summary

Constructors

Constructor and Description
Container()

Method Summary

Modifier and Type	Method and Description
boolean	isEOF()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

containerByteSize

public int containerByteSize

Byte size of the content excluding header.

sequenceId

public int sequenceId

alignmentStart

public int alignmentStart

alignmentSpan

public int alignmentSpan

nofRecords

public int nofRecords

globalRecordCounter

public long globalRecordCounter

bases

public long bases

blockCount

public int blockCount

landmarks

public int[] landmarks

checksum

public int checksum

blocks

public Block[] blocks

Container data

header

public CompressionHeader header

slices

public Slice[] slices

buildHeaderTime

public long buildHeaderTime

buildSlicesTime

public long buildSlicesTime

writeTime

public long writeTime

parseTime

public long parseTime

readTime

public long readTime

offset

public long offset

Container start in the stream.

Constructor Detail

Container

public Container()

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

isEOF

public boolean isEOF()