htsjdk.samtools.cram.lossy

Class QualityScorePreservation

java.lang.Object

htsjdk.samtools.cram.lossy.QualityScorePreservation

public class QualityScorePreservation
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
QualityScorePreservation(java.lang.String specification)

Method Summary

Modifier and Type	Method and Description
void	addQualityScores(SAMRecord samRecord, CramCompressionRecord cramRecord, ReferenceTracks referenceTracks)
boolean	areReferenceTracksRequired()
java.util.List<PreservationPolicy>	getPreservationPolicies()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

QualityScorePreservation

public QualityScorePreservation(java.lang.String specification)

Method Detail

getPreservationPolicies

public java.util.List<PreservationPolicy> getPreservationPolicies()

addQualityScores

public void addQualityScores(SAMRecord samRecord,
                             CramCompressionRecord cramRecord,
                             ReferenceTracks referenceTracks)

areReferenceTracksRequired

public boolean areReferenceTracksRequired()