htsjdk.samtools.cram.encoding.readfeatures

Class InsertBase

java.lang.Object

htsjdk.samtools.cram.encoding.readfeatures.InsertBase

All Implemented Interfaces:

ReadFeature, java.io.Serializable

public class InsertBase
extends java.lang.Object
implements java.io.Serializable, ReadFeature

A read feature representing a single insert base.

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static byte	operator

Constructor Summary

Constructors

Constructor and Description
InsertBase()
InsertBase(int position, byte base)

Method Summary

Modifier and Type	Method and Description
boolean	equals(java.lang.Object obj)
byte	getBase()
byte	getOperator() Read features are distinguished by operator, similar to cigar operator.
int	getPosition()
void	setBase(byte base)
void	setPosition(int position)
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

operator

public static final byte operator

See Also:

Constant Field Values

Constructor Detail

InsertBase

public InsertBase()

InsertBase

public InsertBase(int position,
                  byte base)

Method Detail

getOperator

public byte getOperator()

Description copied from interface: ReadFeature

Read features are distinguished by operator, similar to cigar operator.

Specified by:

getOperator in interface ReadFeature

Returns:

type of the read feature

getPosition

public int getPosition()

Specified by:

getPosition in interface ReadFeature

Returns:

zero-based position in the read

setPosition

public void setPosition(int position)

Specified by:

setPosition in interface ReadFeature

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class java.lang.Object

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getBase

public byte getBase()

setBase

public void setBase(byte base)