public class CramRecordReader extends AbstractReader
alignmentStartCodec, APDelta, baseCodec, basesCodec, baseSubstitutionCodec, bitFlagsCodec, captureReadNames, compressionBitFlagsCodec, deletionLengthCodec, distanceToNextFragmentCodec, hardClipCodec, insertionCodec, insertSizeCodec, mappingScoreCodec, mateAlignmentStartCodec, mateBitFlagCodec, mateReferenceIdCodec, numberOfReadFeaturesCodec, paddingCodec, qualityScoreCodec, qualityScoresCodec, readFeatureCodeCodec, readFeaturePositionCodec, readGroupCodec, readLengthCodec, readNameCodec, refId, refIdCodec, refSkipCodec, scoresCodec, softClipCodec, tagIdDictionary, tagIdListCodec, tagValueCodecs
Constructor and Description |
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CramRecordReader(ValidationStringency validationStringency) |
Modifier and Type | Method and Description |
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void |
read(CramCompressionRecord cramRecord) |
public CramRecordReader(ValidationStringency validationStringency)
public void read(CramCompressionRecord cramRecord)