htsjdk.samtools.cram.digest

Class ContentDigests

java.lang.Object

htsjdk.samtools.cram.digest.ContentDigests

public class ContentDigests
extends java.lang.Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ContentDigests.KNOWN_DIGESTS

Field Summary

Fields

Modifier and Type	Field and Description
static java.util.EnumSet<ContentDigests.KNOWN_DIGESTS>	ALL
static java.util.EnumSet<ContentDigests.KNOWN_DIGESTS>	CRC32

Method Summary

Modifier and Type	Method and Description
void	add(CramCompressionRecord record)
void	addCramRecords(java.lang.Iterable<CramCompressionRecord> records)
void	addSAMRecords(java.lang.Iterable<SAMRecord> records)
static ContentDigests	create(java.util.EnumSet<ContentDigests.KNOWN_DIGESTS> requestedDigests)
static ContentDigests	create(SAMBinaryTagAndValue binaryTags)
SAMBinaryTagAndValue	getAsTags()
boolean	test(SAMBinaryTagAndValue tags)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ALL

public static final java.util.EnumSet<ContentDigests.KNOWN_DIGESTS> ALL

CRC32

public static final java.util.EnumSet<ContentDigests.KNOWN_DIGESTS> CRC32

Method Detail

create

public static ContentDigests create(java.util.EnumSet<ContentDigests.KNOWN_DIGESTS> requestedDigests)

create

public static ContentDigests create(SAMBinaryTagAndValue binaryTags)

add

public void add(CramCompressionRecord record)

addSAMRecords

public void addSAMRecords(java.lang.Iterable<SAMRecord> records)

addCramRecords

public void addCramRecords(java.lang.Iterable<CramCompressionRecord> records)

getAsTags

public SAMBinaryTagAndValue getAsTags()

test

public boolean test(SAMBinaryTagAndValue tags)