htsjdk.variant.variantcontext.writer

Class BCF2FieldWriter.GenericSiteWriter

java.lang.Object

htsjdk.variant.variantcontext.writer.BCF2FieldWriter

htsjdk.variant.variantcontext.writer.BCF2FieldWriter.SiteWriter

htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenericSiteWriter

Enclosing class:

BCF2FieldWriter

public static class BCF2FieldWriter.GenericSiteWriter
extends BCF2FieldWriter.SiteWriter

Nested Class Summary

Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter

BCF2FieldWriter.FTGenotypesWriter, BCF2FieldWriter.GenericSiteWriter, BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.SiteWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter

Constructor Summary

Constructors

Constructor and Description
GenericSiteWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)

Method Summary

Modifier and Type	Method and Description
void	site(BCF2Encoder encoder, VariantContext vc)

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter

done, getField, getFieldEncoder, getHeader, start, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GenericSiteWriter

public GenericSiteWriter(VCFHeader header,
                         BCF2FieldEncoder fieldEncoder)

Method Detail

site

public void site(BCF2Encoder encoder,
                 VariantContext vc)
          throws java.io.IOException

Specified by:

site in class BCF2FieldWriter.SiteWriter

Throws:

java.io.IOException