htsjdk.variant.variantcontext.filter

Class SnpFilter

java.lang.Object

htsjdk.variant.variantcontext.filter.SnpFilter

All Implemented Interfaces:

VariantContextFilter

public class SnpFilter
extends java.lang.Object
implements VariantContextFilter

A Predicate on VariantContexts that returns true at sites that are SNPs

Constructor Summary

Constructors

Constructor and Description
SnpFilter()

Method Summary

Modifier and Type	Method and Description
boolean	test(VariantContext variantContext) Determines whether a VariantContext matches this filter

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SnpFilter

public SnpFilter()

Method Detail

test

public boolean test(VariantContext variantContext)

Description copied from interface: VariantContextFilter

Determines whether a VariantContext matches this filter

Specified by:

test in interface VariantContextFilter

Parameters:

variantContext - the record to examine for being a SNP

Returns:

true if variantContext is a SNP