Class | Description |
---|---|
LinearIndex |
Index defined by dividing the genome by chromosome, then each chromosome into bins of fixed width (in
genomic coordinates).
|
LinearIndex.ChrIndex |
Blocks are organized as a simple flat list:
Block 0
Block 1
Block 2
There's a constant bin width, so that each block corresponds to a specific interval
over the genome based on its index, as in:
Block 0: (0 - binWidth]
Block 1: (binWidth - 2 * binWidth]
Block 2: (2 * binWidth - 3 * binWidth]
Note that covered regions are open on the left ( and closed on the right ].
|
LinearIndexCreator |
For creating a LinearIndex from a stream of features.
|