htsjdk.samtools.util

Class SnappyLoader

java.lang.Object

htsjdk.samtools.util.SnappyLoader

public class SnappyLoader
extends java.lang.Object

If Snappy is available, obtain single-arg ctors for SnappyInputStream and SnappyOutputStream.

Field Summary

Fields

Modifier and Type	Field and Description
boolean	SnappyAvailable

Constructor Summary

Constructors

Constructor and Description
SnappyLoader()
SnappyLoader(boolean verbose) Constructs a new SnappyLoader which will check to see if snappy is available in the JVM/library path.

Method Summary

Modifier and Type	Method and Description
java.io.InputStream	wrapInputStream(java.io.InputStream inputStream) Wrap an InputStream in a SnappyInputStream.
java.io.OutputStream	wrapOutputStream(java.io.OutputStream outputStream) Wrap an InputStream in a SnappyInputStream.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SnappyAvailable

public final boolean SnappyAvailable

Constructor Detail

SnappyLoader

public SnappyLoader()

SnappyLoader

public SnappyLoader(boolean verbose)

Constructs a new SnappyLoader which will check to see if snappy is available in the JVM/library path.

Parameters:

verbose - if true output a small number of debug messages to System.err

Method Detail

wrapInputStream

public java.io.InputStream wrapInputStream(java.io.InputStream inputStream)

Wrap an InputStream in a SnappyInputStream. If Snappy is not available will throw an exception.

wrapOutputStream

public java.io.OutputStream wrapOutputStream(java.io.OutputStream outputStream)

Wrap an InputStream in a SnappyInputStream. If Snappy is not available will throw an exception.