htsjdk.samtools.util

Class SamLocusIterator.RecordAndOffset

java.lang.Object

htsjdk.samtools.util.AbstractRecordAndOffset

htsjdk.samtools.util.SamLocusIterator.RecordAndOffset

Enclosing class:

SamLocusIterator

public static class SamLocusIterator.RecordAndOffset
extends AbstractRecordAndOffset

Implementation of AbstractRecordAndOffset class for SamLocusIterator. One object represents one aligned base of inner SAMRecord.

Field Summary

Fields inherited from class htsjdk.samtools.util.AbstractRecordAndOffset

offset, record

Constructor Summary

Constructors

Constructor and Description
RecordAndOffset(SAMRecord record, int offset)

Method Summary

Methods inherited from class htsjdk.samtools.util.AbstractRecordAndOffset

getBaseQualities, getBaseQuality, getLength, getOffset, getReadBase, getReadName, getRecord, getRefPos, validateOffset

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RecordAndOffset

public RecordAndOffset(SAMRecord record,
                       int offset)

Parameters:

record - inner SAMRecord

offset - 0-based offset from the start of SAMRecord