public class IntervalUtil
extends java.lang.Object
Constructor and Description |
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IntervalUtil() |
Modifier and Type | Method and Description |
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static void |
assertOrderedNonOverlapping(java.util.Iterator<Interval> intervals,
SAMSequenceDictionary sequenceDictionary)
Throws RuntimeException if the given intervals are not locus ordered and non-overlapping
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static boolean |
contains(IntervalList intervalList,
java.lang.String sequenceName,
long position)
Return true if the sequence/position lie in the provided interval list.
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static boolean |
contains(Interval interval,
java.lang.String sequenceName,
long position)
Return true if the sequence/position lie in the provided interval.
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public static boolean contains(Interval interval, java.lang.String sequenceName, long position)
public static boolean contains(IntervalList intervalList, java.lang.String sequenceName, long position)
public static void assertOrderedNonOverlapping(java.util.Iterator<Interval> intervals, SAMSequenceDictionary sequenceDictionary)
intervals
- sequenceDictionary
- used to determine order of sequences