htsjdk.samtools.cram.io

Class LTF8

java.lang.Object

htsjdk.samtools.cram.io.LTF8

public class LTF8
extends java.lang.Object

Methods to read and write LTF8 as per CRAM specs.

Constructor Summary

Constructors

Constructor and Description
LTF8()

Method Summary

Modifier and Type	Method and Description
static long	readUnsignedLTF8(java.io.InputStream inputStream) Reads an unsigned long value from the input stream.
static int	writeUnsignedLTF8(long value, java.io.OutputStream outputStream) Writes an unsigned long value to the output stream.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LTF8

public LTF8()

Method Detail

readUnsignedLTF8

public static long readUnsignedLTF8(java.io.InputStream inputStream)
                             throws java.io.IOException

Reads an unsigned long value from the input stream. The sign bit should be interpreted just as other bits in the value.

Parameters:

inputStream - input stream to be read from

Returns:

value encoded in the stream as LTF8

Throws:

java.io.IOException - as per java IO contract

writeUnsignedLTF8

public static int writeUnsignedLTF8(long value,
                                    java.io.OutputStream outputStream)
                             throws java.io.IOException

Writes an unsigned long value to the output stream. The sign bit is interpreted just as other bits in the value.

Parameters:

value - the value to be written

outputStream - the output stream to write to

Returns:

the number of bits written

Throws:

java.io.IOException - as per java IO contract