htsjdk.samtools.cram.encoding.reader

Class DataReaderFactory

java.lang.Object

htsjdk.samtools.cram.encoding.reader.DataReaderFactory

public class DataReaderFactory
extends java.lang.Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	DataReaderFactory.DataReaderWithStats<T>

Constructor Summary

Constructors

Constructor and Description
DataReaderFactory()

Method Summary

Modifier and Type	Method and Description
AbstractReader	buildReader(AbstractReader reader, BitInputStream bitInputStream, java.util.Map<java.lang.Integer,java.io.InputStream> inputMap, CompressionHeader header, int refId)
java.util.Map<java.lang.String,DataReaderFactory.DataReaderWithStats>	getStats(CramRecordReader reader)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DataReaderFactory

public DataReaderFactory()

Method Detail

buildReader

public AbstractReader buildReader(AbstractReader reader,
                                  BitInputStream bitInputStream,
                                  java.util.Map<java.lang.Integer,java.io.InputStream> inputMap,
                                  CompressionHeader header,
                                  int refId)
                           throws java.lang.IllegalArgumentException

Throws:

java.lang.IllegalArgumentException

getStats

public java.util.Map<java.lang.String,DataReaderFactory.DataReaderWithStats> getStats(CramRecordReader reader)
                                                                               throws java.lang.IllegalArgumentException,
                                                                                      java.lang.IllegalAccessException

Throws:

java.lang.IllegalArgumentException

java.lang.IllegalAccessException