htsjdk.samtools.cram.build

Class ContainerFactory

java.lang.Object

htsjdk.samtools.cram.build.ContainerFactory

public class ContainerFactory
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
ContainerFactory(SAMFileHeader samFileHeader, int recordsPerSlice)

Method Summary

Modifier and Type	Method and Description
Container	buildContainer(java.util.List<CramCompressionRecord> records)
boolean	isPreserveReadNames()
void	setPreserveReadNames(boolean preserveReadNames)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ContainerFactory

public ContainerFactory(SAMFileHeader samFileHeader,
                        int recordsPerSlice)

Method Detail

buildContainer

public Container buildContainer(java.util.List<CramCompressionRecord> records)
                         throws java.lang.IllegalArgumentException,
                                java.lang.IllegalAccessException,
                                java.io.IOException

Throws:

java.lang.IllegalArgumentException

java.lang.IllegalAccessException

java.io.IOException

isPreserveReadNames

public boolean isPreserveReadNames()

setPreserveReadNames

public void setPreserveReadNames(boolean preserveReadNames)