htsjdk.samtools

Class SRAIterator.RecordRangeInfo

java.lang.Object

htsjdk.samtools.SRAIterator.RecordRangeInfo

Enclosing class:

SRAIterator

public static class SRAIterator.RecordRangeInfo
extends java.lang.Object

Describes record ranges info needed for emulating BAM index

Constructor Summary

Constructors

Constructor and Description
RecordRangeInfo(java.util.List<java.lang.Long> referenceLengthsAligned, long numberOfReads)

Method Summary

Modifier and Type	Method and Description
long	getNumberOfReads()
java.util.List<java.lang.Long>	getReferenceLengthsAligned()
java.util.List<java.lang.Long>	getReferenceOffsets()
long	getTotalRecordRangeLength()
long	getTotalReferencesLength()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RecordRangeInfo

public RecordRangeInfo(java.util.List<java.lang.Long> referenceLengthsAligned,
                       long numberOfReads)

Parameters:

referenceLengthsAligned - a list with lengths of each reference

numberOfReads - total number of reads within SRA archive

Method Detail

getNumberOfReads

public long getNumberOfReads()

getTotalReferencesLength

public long getTotalReferencesLength()

getTotalRecordRangeLength

public long getTotalRecordRangeLength()

getReferenceOffsets

public final java.util.List<java.lang.Long> getReferenceOffsets()

getReferenceLengthsAligned

public final java.util.List<java.lang.Long> getReferenceLengthsAligned()