htsjdk.samtools

Class NotPrimarySkippingIterator

java.lang.Object

htsjdk.samtools.NotPrimarySkippingIterator

public class NotPrimarySkippingIterator
extends java.lang.Object

Wrapper around SAMRecord iterator that skips over non-primary elements. This iterator conflates a filtering iterator and a peekable iterator. It would be cleaner to handle those concerns separately.

Constructor Summary

Constructors

Constructor and Description
NotPrimarySkippingIterator(CloseableIterator<SAMRecord> underlyingIt)

Method Summary

Modifier and Type	Method and Description
boolean	advance()
SAMRecord	getCurrent()
boolean	hasCurrent()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NotPrimarySkippingIterator

public NotPrimarySkippingIterator(CloseableIterator<SAMRecord> underlyingIt)

Method Detail

hasCurrent

public boolean hasCurrent()

getCurrent

public SAMRecord getCurrent()

advance

public boolean advance()