public class HeterozygosityFilter extends java.lang.Object implements VariantContextFilter
Constructor and Description |
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HeterozygosityFilter(boolean keepHets)
Constructor as above that doesn't take a sample, instead it will look at the first genotype of the variant context.
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HeterozygosityFilter(boolean keepHets,
java.lang.String sample)
Constructor for a filter that will keep (or remove, if keepHets is false) VC for which the
genotype of sample is heterozygous.
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Modifier and Type | Method and Description |
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boolean |
test(VariantContext variantContext)
Determines whether a VariantContext matches this filter
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public HeterozygosityFilter(boolean keepHets, java.lang.String sample)
keepHets
- determine whether to keep the het sites (true) or filter them out (false)sample
- the name of the sample in the variant context whose genotype should be examined.public HeterozygosityFilter(boolean keepHets)
keepHets
- if true, the heterozygous variant contexts will pass the filter, otherwise they will fail.public boolean test(VariantContext variantContext)
VariantContextFilter
test
in interface VariantContextFilter
variantContext
- the record to examine for heterozygosity