| Class | Description |
|---|---|
| ReferenceCache |
That is a thread-safe wrapper for a list of cache Reference objects.
|
| SRAAccession |
Describes a single SRA accession for SRA read collection
Also provides app string functionality and allows to check if working SRA is supported on the running platform
Important: due to checks performed in SRAAccession.isValid(), we won't recognise any accessions other
than ones that follow the pattern "^[SED]RR[0-9]{6,9}$", e.g.
|
| SRAAlignmentIterator |
Iterator for aligned reads.
|
| SRAIndexedSequenceFile |
Allows reading Reference data from SRA
|
| SRALazyRecord |
Extends SAMRecord so that any of the fields will be loaded only when needed.
|
| SRAUnalignmentIterator |
Iterator for unaligned reads.
|
| SRAUtils |
Provides some functionality which can be used by other classes
Created by andrii.nikitiuk on 10/28/15.
|