Constructor and Description |
---|
SRAUnalignmentIterator(SRAAccession accession,
ngs.ReadCollection run,
SAMFileHeader header,
SRAIterator.RecordRangeInfo recordRangeInfo,
Chunk chunk) |
Modifier and Type | Method and Description |
---|---|
boolean |
hasNext() |
SAMRecord |
next() |
void |
remove() |
void |
setValidationStringency(ValidationStringency validationStringency) |
public SRAUnalignmentIterator(SRAAccession accession, ngs.ReadCollection run, SAMFileHeader header, SRAIterator.RecordRangeInfo recordRangeInfo, Chunk chunk)
run
- opened read collectionheader
- sam headerrecordRangeInfo
- info about record ranges withing SRA archivechunk
- used to determine which unaligned reads the iterator should returnpublic boolean hasNext()
hasNext
in interface java.util.Iterator<SAMRecord>
public void remove()
remove
in interface java.util.Iterator<SAMRecord>
public void setValidationStringency(ValidationStringency validationStringency)