htsjdk.variant.variantcontext.writer

Interfaces

• VariantContextWriter

Classes

• AsyncVariantContextWriter
• BCF2Encoder
• BCF2FieldEncoder
• BCF2FieldEncoder.AtomicInt
• BCF2FieldEncoder.Flag
• BCF2FieldEncoder.Float
• BCF2FieldEncoder.GenericInts
• BCF2FieldEncoder.IntArray
• BCF2FieldEncoder.StringOrCharacter
• BCF2FieldWriter
• BCF2FieldWriter.FTGenotypesWriter
• BCF2FieldWriter.GenericSiteWriter
• BCF2FieldWriter.GenotypesWriter
• BCF2FieldWriter.GTWriter
• BCF2FieldWriter.IGFGenotypesWriter
• BCF2FieldWriter.IntegerTypeGenotypesWriter
• BCF2FieldWriter.SiteWriter
• BCF2FieldWriter.StaticallyTypeGenotypesWriter
• BCF2FieldWriterManager
• IntGenotypeFieldAccessors
• IntGenotypeFieldAccessors.Accessor
• IntGenotypeFieldAccessors.ADAccessor
• IntGenotypeFieldAccessors.DPAccessor
• IntGenotypeFieldAccessors.GQAccessor
• IntGenotypeFieldAccessors.PLAccessor
• SortingVariantContextWriter
• VariantContextWriterBuilder
• VariantContextWriterFactory

Enums

• Options
• VariantContextWriterBuilder.OutputType